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SRX2764994: Pathogen panel for WGS validation in public health laboratories
1 ILLUMINA (Illumina MiSeq) run: 1.7M spots, 724.8M bases, 464Mb downloads

Design: Nextera XT, paired-read
Submitted by: California Department of Public Health
Study: Bacterial WGS validation panel
show Abstracthide Abstract
The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting species, 9 Mycobacterium tuberculosis, and 5 miscellaneous bacteria. Raw reads and genome assemblies can be used for validation of sequencing platforms and kits as per CLIA (Clinical Laboratory Improvement Act) requirements for the laboratory developed test (LDT), and for future multi-laboratory comparisons of WGS in public health laboratories.
Sample: CDPH_C1
SAMN05721768 • SRS1663155 • All experiments • All runs
Library:
Name: C1_3c
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.7M spots, 724.8M bases, 464Mb
Run# of Spots# of BasesSizePublished
SRR54815431,700,958724.8M464Mb2017-04-25

ID:
3984607

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